EnSuite | ENFIN

The European Network of Excellence, ENFIN, is committed to providing a Europe-wide integration of computational approaches in systems biology

EnSuite

EnSuite is a selection of analysis tools provided to help you perform a range of typical systems biology tasks.

To make it easier for you to find the analysis tool you need, we have put each tool in one of three categories:

Discrete function prediction - predicting individual or pairwise interactions
Network reconstruction - integrating and extending network representations
Systems-level modelling - modelling networks

Discrete function prediction

ENFIN Partner	Analysis Tool description
Spanish National Cancer Research Centre (CNIO)	Spindle protein prediction by literature mining
BioCentrum-DTU (DTU)	Spindle protein prediction by Neuronal Networks
Centre for Integrative Bioinformatics VU (IBIVU)	Sequence Harmony Domaination Scooby-domain webPRC: The Profile Comparer with domain databases PhyloPars: estimation of missing parameters using phylogeny All tools
University College London (UCL)	CATH database Gene3D database FUNCNET: Open platform for the prediction and comparison of human protein function
University of Dundee (UNIVDUN)	Bioinformatics software

Network reconstruction

ENFIN Partner	Analysis Tool description
European Molecular Biology Laboratory (EMBL)	Reactome
QureTEC (QURETEC)	g:Profiler MEM GraphWeb KEGG Anim VisHic
University of Helsinki (UH)	PINA-Protein Interaction Network Analysis platform
Weizmann Institute of Science (WI)	GENOMICA - Nucleosomes Positioning

Systems-level modelling

ENFIN Partner	Analysis Tool description
Genoscope (Genoscope)	CycSim: Simulation tool with metabolic models
Swiss Institute of Bioinformatics (SIB)	SQUAD - modelling of regulatory networks using the Standardized Qualitative Modelling Approach