Publications
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Ainali C, Simon M, Freilich S, Espinosa O, Hazelwood L, Tsoka S, Ouzounis CA, Hancock JM(2011) Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins BMC Evolutionary Biology 11:142
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Aurelio A. Moya-Garcia, Carlos E. Rodriguez, Ian Morilla, Francisca Sanchez-Jimenez, Juan A.G. Ranea(2011) The function of histamine receptor H4R in the brain revealed by interaction partners Frontiers in Bioscience S3: 1058-1066
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Barberis M, Beck C, Amoussouvi A, Schreiber G, Diener C, Herrmann A, Klipp E.(2011) A low number of SIC1 mRNA molecules ensures a low noise level in cell cycle progression of budding yeast. Mol Biosyst. 2011 7(10):2804-12.
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Barberis M, Linke C, Adrover MA, González-Novo A, Lehrach H, Krobitsch S, Posas F, Klipp E.(2011) Sic1 plays a role in timing and oscillatory behaviour of B-type cyclins. Biotechnol Adv.
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Bonzanni N., Zhang N., Oliver S.G., Fisher J.(2011) The role of proteosome-mediated proteolysis in modulating the activity of potentially harmful transcription factor activity in Saccharomyces cerevisiae Bioinformatics in press
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Brandt, B.W. and Heringa, J.(2011) Protein analysis tools and services at IBIVU J. Integr. Bioinform. 8(2): 168
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Díez D, Sánchez-Jiménez F, Ranea JA(2011) Evolutionary expansion of the Ras switch regulatory module in eukaryotes Nucleic Acids Res
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Gaudet, P., Bairoch, A., Field, D., Sansone, S.-A., Taylor, C., Attwood, T.K., Bateman, A., Blake, J.A., Bult, C.J., Cherry, J.M., Chisholm, R.L., Cochrane, G., Cook, C.E., Eppig, J.T., Galperin, M.Y., Gentleman, R., Goble, C.A., Gojobori, T., Hancock, J.M., Howe, D.G., Imanishi, T., Kelso, J., Landsman, D., Lewis, S.E., Mizrachi, I.K., Orchard, S., Ouellettte, B.F.F., Ranganathan, S., Richardson, L., Rocca-Serra, P., Schofield, P.N., Smedley, D., Southan, C.D., Tan, T.W., Tatusova, T., Whetzel, P.L., White, O. & Yamasaki, C. on behalf of the BioDBCore working group(2011) Towards BioDBCore: a community-defined information specification for biological databases. Database baq027
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Janine C. Quijano, Michael J. Stinchfield, Stuart J. Newfeld(2011) Wg signaling via Zw3 and Mad restricts self-renewal of sensory organ precursor cells in Drosophila Genetics
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Jonathan G Lees, Jean-Karim Heriche, Ian Morilla, Juan A Ranea and Christine A Orengo(2011) Systematic computational prediction of protein interaction networks Physical Biology
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Jonathan Go ̈ke, Marc Jung, Sarah Behrens, Lukas Chavez, Sean O’Keeffe, Bernd Timmermann, Hans Lehrach, James Adjaye, Martin Vingron(2011) Combinatorial Binding in Human and Mouse Embryonic Stem Cells Identifies Conserved Enhancers Active in Early Embryonic Development PLoS Comput Biol 7(12): e1002304
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Reimand, Jüri; Arak, Tambet; Vilo, Jaak(2011) g:Profiler --- a web server for functional interpretation of gene lists. Nucleic Acids Research (web server issue 2011)
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Salazar GA, Jimenez RC, Garcia A, Hermjakob H, Mulder N, Blake E(2011) DAS Writeback: A Collaborative Annotation System BMC Bioinformatics 12(1):143
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Santamaria A, Wang B, Elowe S, Malik R, Zhang F, Bauer M, Schmidt A, Sillje HH, Koerner R, Nigg EA(2011) The Plk1-dependent Phosphoproteome of the Early Mitotic Spindle Mol Cell Proteomics 10(1):M110.004457
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Schreiber G, Barberis M, Scolari S, Klaus C, Herrmann A, Klipp E.(2011) Unraveling interactions of cell cycle-regulating proteins Sic1 and B-type cyclins in living yeast cells: a FLIM-FRET approach FASEB J.
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Stokes A, Drozdov I, Guerra E, Ouzounis CA, Warnakulasuriya S, Gleeson MJ, McGurk M, Tavassoli M, Odell EW(2011) Copy Number and Loss of Heterozygosity Detected by SNP Array of Formalin-Fixed Tissues Using Whole-Genome Amplification PLoS ONE accepted for publication
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Tretyakov K, Laur S, Vilo J(2011) G = MAT: Linking Transcription Factor Expression and DNA Binding Data PLoS ONE 6(1): e14559
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Troshin P, Scott M, Barton GJ(2011) Java Bioinformatics Web Services for Multiple Sequence Alignment – JABAWS:MSA. Bioinformatics in press
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Zhike Zi, Zipei Feng, Douglas A Chapnick, Markus Dahl, Difan Deng, Edda Klipp, Aristidis Moustakas and Xuedong Liu(2011) Quantitative analysis of transient and sustained transforming growth factor-β signaling dynamics Molecular Systems Biology 7:492
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Pascal Kahlem, Alessandro DiCara, Maxime Durot, John M. Hancock, Edda Klipp, Vincent Schächter, Eran Segal, Ioannis Xenarios, Ewan Birney and Luis Mendoza(2011) Strengths and Weaknesses of Selected Modeling Methods Used in Systems Biology InTech
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D11.8 Report on the use of the Experimental Resources Budget by the ENFIN Community
(Delivered Mon, 2011-08-01)
(WP11: Management Activities) -
D9.8 Report the panel of ENFIN documentations and the portals giving access to them
(Delivered Mon, 2011-08-01)
(WP9: Documentation from a wet laboratory perspective) -
D2.14 Overview of the contributions of ENFIN to Reactome database
(Delivered Wed, 2011-04-27)
(WP2: Curation of appropriate pathway knowledge and hypotheses) -
D7.7 Report on existing challenges to assess bioinformatics methods
(Delivered Tue, 2011-02-22)
(WP7: Critical Assessment and Integration) -
D10.8 Report on the fourth SME meeting
(Delivered Sat, 2011-01-15)
(WP10: SME focused outreach)
